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The relationship between genetic and ploidy variation in the context of differing ecological conditions of two species of the genus Pteronia (Asteraceae) in the Cape
Havlíčková, Eliška ; Chumová, Zuzana (advisor) ; Záveská, Eliška (referee)
The genus Pteronia is an example of a recently radiated and taxonomically complicated genus of the family Asteraceae (sunflower family) with endemic connection to southern Africa. Most of the species are associated with the Cape region, an area characterised by a Mediterranean type of climate, which is comparable in species richness to the flora of tropical areas, especially on smaller geographical scales. The factors behind the high diversity of the Cape are environmental heterogeneity, climatic stability (low extinction and accumulation of species) and regular disturbance by fire. Polyploidization, one of the main mechanisms of plant evolution, has been an overlooked and denied phenomenon in the Cape for a long time. Individual cases of polyploidy are being revealed, but the causes of their emergence and extent of their occurrence are unknown. The presented work focuses on polyploidization in the genus Pteronia from the perspective of two species with different ecological valence. On the widespread to invasive species Pteronia incana and, on the contrary, on the endemic species of succulent karoo and deserts, Pteronia glabrata. Using flow cytometry, genome size variation was investigated and ploidy levels determined. The obtained cytometric data were used to compare climatic, topographic,...
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Implemenation of the RAD sequencing methods to the population genetic studies of hedgehogs from the genus Erinaceus
Loudová, Miroslava ; Černá Bolfíková, Barbora (advisor) ; Choleva, Lukáš (referee)
Hedgehogs from the genus Erinaceus are an important model organism for studying the postglacial recolonisation of Europe and the processes that take place in the secondary contact zones of their areas of distribution. In this study, five individuals of white-breasted hedgehog (Erinaceus roumanicus), four individuals of western hedgehog (Erinaceus europaeus) and one estimated hybrid were analysed. Geographical distribution of individuals used in the study covers the region of the Central Europe, however in the further research expansion of analsysed individuals will be needed and the whole Palearct should be sampled. The main goal was to implement novel methods in research of hedgehogs, which will enable to map the population-genomic structure of the genus Erinaceus in western Palearct. The method RADSeq (Restriction site associated DNA sequencing) enables to obtain polymorphic markers, e.g., SNPs which we used (Single Nucleotide Polymorphisms) across the genome. In this work it was analyzed 16382 SNPs. Using the binary data which indicates the presence and absence of SNPs for each species, hypotheses raised under classical analyzes of genetic markers from previous studies have not been fully confirmed. In further research it will be necessary to verify possible occurrence of biases connected with...
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Implemenation of the RAD sequencing methods to the population genetic studies of hedgehogs from the genus Erinaceus
Loudová, Miroslava ; Černá Bolfíková, Barbora (advisor) ; Choleva, Lukáš (referee)
Hedgehogs from the genus Erinaceus are an important model organism for studying the postglacial recolonisation of Europe and the processes that take place in the secondary contact zones of their areas of distribution. In this study, five individuals of white-breasted hedgehog (Erinaceus roumanicus), four individuals of western hedgehog (Erinaceus europaeus) and one estimated hybrid were analysed. Geographical distribution of individuals used in the study covers the region of the Central Europe, however in the further research expansion of analsysed individuals will be needed and the whole Palearct should be sampled. The main goal was to implement novel methods in research of hedgehogs, which will enable to map the population-genomic structure of the genus Erinaceus in western Palearct. The method RADSeq (Restriction site associated DNA sequencing) enables to obtain polymorphic markers, e.g., SNPs which we used (Single Nucleotide Polymorphisms) across the genome. In this work it was analyzed 16382 SNPs. Using the binary data which indicates the presence and absence of SNPs for each species, hypotheses raised under classical analyzes of genetic markers from previous studies have not been fully confirmed. In further research it will be necessary to verify possible occurrence of biases connected with...
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